miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Cucumis melo subsp. melo, Euonymus alatus, Euphorbia esula, Fagus sylvatica, Fragaria vesca, Fragaria x ananassa, Glycine soja, Glycyrrhiza uralensis, Hevea brasiliensis, Humulus lupulus, Jatropha curcas, Juglans hindsii x Juglans regia, Linum usitatissimum, Lotus japonicus, Manihot esculenta, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Prunus armeniaca, Prunus persica, Quercus petraea, Quercus robur, Trifolium pratense, Bruguiera gymnorhiza, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Populus trichocarpa, Phaseolus vulgaris, Ricinus communis, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST008873
species: Populus trichocarpa
miRNA family: MIRf1017
source: miRNEST

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CCTTATCTGCATTTGCACCTG

miRNA*
 GGTGCAAGTGCAGGTGAATGCC

mismatches: 1
bulges: 1
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pre-miRNA
 ATTATGCATGCCAATATGTTGCCTTATCTGCATTTGCACCTGCATCTTATGCGTTGGTTTCGTTTTTGACTCCACAAACAAAATCAAGTTCTGTCGATAC
AGTATGTGGGACAATGGACATATGGAAACTAATAAGCTTAGTTGAGGTGCAGGTGCAAGTGCAGGTGAATGCCATGTTGGTAATGTTTTCA

dot-bracket secondary structure
.....(((((((((((((..((.((((((((((((((((((((((((((.(((((((((((.((.(((..((((((.((...(((..........)))..
.)).)))))).))).)).......)))))))))..)).....))))))))))))))))))))))))))..))))))))))).)))).....


SIMILARITIES
miRBase ptc-MIR530b: 2e-71

PMRD ptc-miR530b: 2e-71

microPC miR530: 9e-40		UniProt no hits

RFAM MIR530: 4e-70		most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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