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Species belonging to selected taxon:

Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Populus trichocarpa, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST008879
species: Populus trichocarpa
miRNA family: MIR403
source: miRNEST

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTAGATTCACGCACAAACTCG

miRNA*
 GGTTTGTGCATGAATCTAATA

mismatches: 3
bulges: 0
View larger
pre-miRNA
 CATCGTCATTTAACGGGAAGAGGCATATTTCAGGTTTGTGCATGAATCTAATATAGCTAAAAAAATCCCATCAAACACAAATTAAAATACTAGATAGCAA
TCAGCACTAGTTTAGTATAGTATTAGATTCACGCACAAACTCGTAATCTGTCTTTTTCAATTCCTTTCTTCT

dot-bracket secondary structure
...(((......)))((((((((((.(((...(((((((((.((((((((((((.(((((............................(((((...((..
...)).))))))))))...)))))))))))).)))))))))...))).))))))))))..............


SIMILARITIES
miRBase ptc-MIR403a: 3e-58

PMRD ptc-miR403a: 3e-58

microPC miR403: 0.0001		UniProt no hits

RFAM MIR403: 2e-56		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
download this record




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