ABOUT THIS RECORDspecies: Populus trichocarpa
miRNA family: MIR414
source: miRNEST
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCATCATCATCATCTTCTTCG miRNA* AGGAGGATGATGATGGTGAGT mismatches: 2 bulges: 0 |
pre-miRNA
TACCGCAAGCCATCACTTCCATCATCATCATCATCATCTTCTTCGTCGTCGTCTAGAGCAATCCCATTAATTCCAAGATCACCTCACGTGGCGGAATACG
CGTCGCAGTCGGTACCGATAAGGAAATTGAACCAGTCGGCCCCGATGAATGTGCCGGTGTTGTCGATTGCAATGGCGAAACAGAGGAATAGCAGGTTTAA
GGAGGATGATGATGGTGAGTTTGATGGAGACGAAGAGATGT
dot-bracket secondary structure
............((..(((((((((((((((((((((((((((..((.(((((....((((((.............(((((((.(((((.((((......
..)))).(((((..(((((..((........)).)))))..)))))..)))))..))))..)))))))))...)))))....)).((((.....)))).)
))))))))))))))))))...))))))))..))........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
TACCGCAAGCCATCACTTCCATCATCATCATCATCATCTTCTTCGTCGTCGTCTAGAGCAATCCCATTAATTCCAAGATCACCTCACGTGGCGGAATACG
CGTCGCAGTCGGTACCGATAAGGAAATTGAACCAGTCGGCCCCGATGAATGTGCCGGTGTTGTCGATTGCAATGGCGAAACAGAGGAATAGCAGGTTTAA
GGAGGATGATGATGGTGAGTTTGATGGAGACGAAGAGATGT
dot-bracket secondary structure
............((..(((((((((((((((((((((((((((..((.(((((....((((((.............(((((((.(((((.((((......
..)))).(((((..(((((..((........)).)))))..)))))..)))))..))))..)))))))))...)))))....)).((((.....)))).)
))))))))))))))))))...))))))))..))........
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
