miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Acyrthosiphon pisum, Aphis gossypii, Nilaparvata lugens, Myzus persicae, Peregrinus maidis, Rhodnius prolixus, Frankliniella occidentalis



ABOUT THIS RECORD

ID: MNEST008891
species: Aphis gossypii
miRNA family: mir-3556
source: miRNEST

Taxonomy by NCBI:
Aphis gossypii Aphis Aphis Aphidini Aphidinae Aphididae Aphidoidea Aphidomorpha Aphidiformes Sternorrhyncha Hemiptera Paraneoptera Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 ACTGGTTTCAAATGGTGCTAG

miRNA*
 ATGCACCACTACGAAACCAGTAT

mismatches: 3
bulges: 2
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pre-miRNA
 CATCAATAAGTACTGGTTTCAAATGGTGCTAGACTAGTTCAAAAATTACTTCTATGCACCACTACGAAACCAGTATTCACTGAC

dot-bracket secondary structure
..(((...((((((((((((...((((((((((..(((.........))))))).))))))....))))))))))))...))).


SIMILARITIES
miRBase api-mir-29: 0.000000000001

PMRD no hits

microPC no hits		UniProt no hits

RFAM mir-29: 3e-16		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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