ABOUT THIS RECORDspecies: Aphis gossypii
miRNA family: mir-10
source: miRNEST
Taxonomy by NCBI:
Aphis gossypii Aphis Aphis Aphidini Aphidinae Aphididae Aphidoidea Aphidomorpha Aphidiformes Sternorrhyncha Hemiptera Paraneoptera Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACCCTGTAGATCCGAATTTGT miRNA* AAATTCGGTTCTAGAGAGGTTT mismatches: 2 bulges: 1 |
pre-miRNA
TGTAGTGATGCTCTACATCTACCCTGTAGATCCGAATTTGTTTGAAAAACGGCGACAAATTCGGTTCTAGAGAGGTTTGTGTGGTGCATATTCCT
dot-bracket secondary structure
.......((((.((((((..(((((.((((.(((((((((((...........))))))))))).)))).)).)))..)))))).))))......
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TGTAGTGATGCTCTACATCTACCCTGTAGATCCGAATTTGTTTGAAAAACGGCGACAAATTCGGTTCTAGAGAGGTTTGTGTGGTGCATATTCCT
dot-bracket secondary structure
.......((((.((((((..(((((.((((.(((((((((((...........))))))))))).)))).)).)))..)))))).))))......
SIMILARITIES| miRBase api-mir-10: 7e-42 PMRD no hits microPC no hits | UniProt no hits RFAM mir-10: 3e-26 | most similar mature miRNAs |
Identical with: api-mir-10 from miRBase (MNEST035050) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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