miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Bicyclus anynana, Drosophila melanogaster, Bombyx mori, Aedes aegypti, Acyrthosiphon pisum, Culex quinquefasciatus, Anopheles gambiae, Dendroctonus ponderosae, Nasonia vitripennis, Drosophila simulans, Aphis gossypii, Glossina morsitans morsitans, Choristoneura fumiferana, Spodoptera frugiperda, Heliothis virescens, Locusta migratoria, Phlebotomus papatasi, Drosophila sechellia, Drosophila auraria, Nilaparvata lugens, Antheraea assama, Drosophila pseudoobscura, Teleopsis dalmanni, Lutzomyia longipalpis, Nasonia giraulti, Bombus terrestris, Myzus persicae, Drosophila willistoni, Drosophila ananassae, Solenopsis invicta, Drosophila virilis, Drosophila erecta, Drosophila grimshawi, Ceratitis capitata, Spodoptera littoralis, Peregrinus maidis, Samia cynthia ricini, Drosophila mojavensis, Danaus plexippus, Cochliomyia hominivorax, Anopheles stephensi, Diabrotica virgifera virgifera, Haematobia irritans irritans, Papilio xuthus, Rhodnius prolixus, Polypedilum vanderplanki, Ostrinia nubilalis, Laupala kohalensis, Frankliniella occidentalis, Trichoplusia ni, Gryllus bimaculatus, Drosophila yakuba, Epiphyas postvittana, Apis mellifera, Tribolium castaneum



ABOUT THIS RECORD

ID: MNEST008895
species: Aphis gossypii
miRNA family: miR-iab
source: miRNEST

Taxonomy by NCBI:
Aphis gossypii Aphis Aphis Aphidini Aphidinae Aphididae Aphidoidea Aphidomorpha Aphidiformes Sternorrhyncha Hemiptera Paraneoptera Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTACGTATACTGAAGGTATACC

miRNA*
 ATACATTTAGTATACGTACA

mismatches: 1
bulges: 2
View larger
pre-miRNA
 AACCACTTTGGGACGATCGGTATGGTACCCTGTTACGTATACTGAAGGTATACCGGACAGTTTTATAATGCACTCAGGATACATTTAGTATACGTACAGGG
TGCCACGCATTATTCGTCGAGTCGA

dot-bracket secondary structure
).(((...)))(((((...((.(((((((((((.((((((((((((.((((.((.((..((........))..)).)))))).))))))))))))))))))
))))).)).....))))).......


SIMILARITIES
miRBase api-mir-iab-4: 9.0E-36

PMRD no hits

microPC no hits		UniProt no hits

RFAM 4mir-iab-4: 3.0E-42		most similar mature miRNAs

Identical with: api-mir-iab-4 from miRBase (MNEST035162)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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