miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Acyrthosiphon pisum, Aphis gossypii, Nilaparvata lugens, Myzus persicae, Peregrinus maidis, Rhodnius prolixus, Frankliniella occidentalis



ABOUT THIS RECORD

ID: MNEST008896
species: Aphis gossypii
miRNA family: miR-iab
source: miRNEST

Taxonomy by NCBI:
Aphis gossypii Aphis Aphis Aphidini Aphidinae Aphididae Aphidoidea Aphidomorpha Aphidiformes Sternorrhyncha Hemiptera Paraneoptera Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GGATACATTTAGTATACGTAC

miRNA*
 TACGTATACTGAAGGTATACCGG

mismatches: 1
bulges: 2
View larger
pre-miRNA
 ACCACTTTGGGACGATCGGTATGGTACCCTGTTACGTATACTGAAGGTATACCGGACAGTTTTATAATGCACTCAGGATACATTTAGTATACGTACAGGG
TGCCACGCATTATTCGTCGAGTCGA

dot-bracket secondary structure
.(((...)))(((((...((.(((((((((((.((((((((((((.((((.((.((..((........))..)).)))))).))))))))))))))))))
))))).)).....))))).......


SIMILARITIES
miRBase api-mir-iab-4: 9e-36

PMRD no hits

microPC no hits		UniProt no hits

RFAM mir-iab-4: 3e-42		most similar mature miRNAs

Identical with: api-mir-iab-4 from miRBase (MNEST035162)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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