ABOUT THIS RECORDspecies: Aphis gossypii
miRNA family: miR-1609
source: miRNEST
Taxonomy by NCBI:
Aphis gossypii Aphis Aphis Aphidini Aphidinae Aphididae Aphidoidea Aphidomorpha Aphidiformes Sternorrhyncha Hemiptera Paraneoptera Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGGCTGAGGCTGTGGTGGTTG miRNA* CTACCGGCACGGCCCTGAATGAA mismatches: 5 bulges: 0 |
pre-miRNA
TCCGACGACTGCTCTACCGGCACGGCCCTGAATGAACCGGACACCGGAGGAATCGCCTTGTTCGGACGTGTTGCCGTAGTCGACGGACGGTGAGAAGGTG
CTGACTGTTGTGGTCGGACCACAGGCTGTGCGGTCCATTCACCGTCATCGAAATCGGAAGCGACCGATATCGGCTGAGGCTGTGGTGGTTGTTGTTGTTG
T
dot-bracket secondary structure
..(((((((.((...((((.(((((((.((..(((.((((...))))(((.....)))...((((.(((....(((...((((..(((((((((..((.(
(((((..(((((((...)))))))...)).)))))).))))))))).))))...)))..))).))))..)))..)).))))))).)))).)).)))))))
.
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TCCGACGACTGCTCTACCGGCACGGCCCTGAATGAACCGGACACCGGAGGAATCGCCTTGTTCGGACGTGTTGCCGTAGTCGACGGACGGTGAGAAGGTG
CTGACTGTTGTGGTCGGACCACAGGCTGTGCGGTCCATTCACCGTCATCGAAATCGGAAGCGACCGATATCGGCTGAGGCTGTGGTGGTTGTTGTTGTTG
T
dot-bracket secondary structure
..(((((((.((...((((.(((((((.((..(((.((((...))))(((.....)))...((((.(((....(((...((((..(((((((((..((.(
(((((..(((((((...)))))))...)).)))))).))))))))).))))...)))..))).))))..)))..)).))))))).)))).)).)))))))
.
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
