ABOUT THIS RECORDspecies: Aphis gossypii
miRNA family: mir-29
source: miRNEST
Taxonomy by NCBI:
Aphis gossypii Aphis Aphis Aphidini Aphidinae Aphididae Aphidoidea Aphidomorpha Aphidiformes Sternorrhyncha Hemiptera Paraneoptera Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCACCATTTGAAACCAGTA miRNA* CTGGTTTCGTAGTGGTGCATAGA mismatches: 1 bulges: 2 |
pre-miRNA
TGTGTATTCGGATTGTTAAACGTCAGTGAATACTGGTTTCGTAGTGGTGCATAGAAGTAATTTTTGAACTAGTCTAGCACCATTTGAAACCAGTACTTAT
TGGATGTGACCGTCTTCAGAAGAT
dot-bracket secondary structure
.........((((.((((....(((((((.((((((((((..((((((((.(((((((.........)))..)))))))))))).)))))))))).))))
)))...)))).)))).........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TGTGTATTCGGATTGTTAAACGTCAGTGAATACTGGTTTCGTAGTGGTGCATAGAAGTAATTTTTGAACTAGTCTAGCACCATTTGAAACCAGTACTTAT
TGGATGTGACCGTCTTCAGAAGAT
dot-bracket secondary structure
.........((((.((((....(((((((.((((((((((..((((((((.(((((((.........)))..)))))))))))).)))))))))).))))
)))...)))).)))).........
SIMILARITIES| miRBase api-mir-29: 0.000000000002 PMRD no hits microPC no hits | UniProt no hits RFAM mir-29: 5e-16 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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