miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Euphorbia esula, Hevea brasiliensis, Jatropha curcas, Linum usitatissimum, Manihot esculenta, Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Bruguiera gymnorhiza, Populus trichocarpa, Ricinus communis, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST008936
species: Ricinus communis
miRNA family: MIR3512
source: miRNEST

Taxonomy by NCBI:
Ricinus communis Ricinus Acalypheae Acalyphoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGCAAATGATGATAAATAGCC

miRNA*
 CTTTTTATCATATTTATAAA

mismatches: 4
bulges: 1
View larger
pre-miRNA
 TTACTTTTGTAAATTTTGATTCCTTTTTATCATATTTATAAAATGACTAGATTTCTTTTTTTTTTTTTCTTTCCTTTTGCTTGGCTTTGGAGAAACAAAA
CAGTACTGCTCAAAGTTTCTCCACTGATGAATGTCAATAGACAAATAAAAGAAGGATGTAAATGACAATCTGAAGCTTCAATATCCACGAAATTACAACT
TTTTCCATGCCAAAAAGAATTATTTTTTACACTCCCATCAATCCCCAATCCATGAGGTAAAGGAAAAGAAAAGAAAAGGTCTAATACTTTGCAAATGATG
ATAAATAGCCAGTCTTTTTTACCACTTTA

dot-bracket secondary structure
........(((((....((((.((.((((((((((((.((((.((..(((((((.(((((((((((((((((((((.((.((((...(((((((((....
.(((...)))....))))))))).(((((..((((....))))..........(((((((((.((.(((.((.((.(((.........))).)).)).((
((((.......)))))).))).)).)))))).))))))))....))))..)).)))).))))))))))))))))).))))))).)).)))).)))).)))
))))).))..))))...))))).......


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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