miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Actinidia chinensis, Actinidia deliciosa, Actinidia eriantha, Antirrhinum majus, Barnadesia spinosa, Cichorium intybus, Coffea canephora, Fraxinus excelsior, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Ipomoea batatas, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Mimulus guttatus, Mimulus guttatus var. nasutus, Mimulus lewisii, Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Ocimum basilicum, Panax ginseng, Parthenium argentatum, Petunia axillaris subsp. axillaris, Salvia miltiorrhiza, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Striga hermonthica, Taraxacum kok-saghyz, Taraxacum officinale, Triphysaria pusilla, Triphysaria versicolor, Zinnia violacea, Capsicum annuum, Carthamus tinctorius, Catharanthus roseus, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus, Solanum tuberosum, Ipomoea nil



ABOUT THIS RECORD

ID: MNEST008942
species: Ipomoea nil
miRNA family: MIRf592
source: miRNEST

Taxonomy by NCBI:
Ipomoea nil Ipomoea Ipomoeeae Convolvulaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GGCGAGTTGTCCTTGGCTACA

miRNA*
 CAGCCAAGGATGACTTGCCGG

mismatches: 1
bulges: 0
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pre-miRNA
 ACATAATCTCATCAATGGCCTTGCATGTTGGCGCAGGAAGCAGGTGGATGCAGCCAAGGATGACTTGCCGGCCGGTGAACTCTTCCTCCTATTGCGGCGG
ACCCAACCATATATCCACCGCTCCGTACACTCTCAGGGTGACGAAAAGTTTGTAAGTTGGCGAGTTGTCCTTGGCTACATCTTCCTGTCTGCCCTTCAAG
CCAGGCTTTGGGTGACATATATACAT

dot-bracket secondary structure
.....((.(((((...(((((.((.((..((.((((...(((((.(((((.(((((((((((((((((((((..(((((((.(((.((.(((.((((.((
(............))).))))...))).((((...)))))).))).)))))))..))))))))))))))))))))).))))).)))))))))))..)).)
).)))))...))))).))........


SIMILARITIES
miRBase osa-MIR169p: 0.0000000008

PMRD osa-miRf11416-akr: 0.0000000008

microPC miR169: 4e-67		UniProt no hits

RFAM MIR169_2: 0.00000001		most similar mature miRNAs

Identical with: miR169 from microPC (MNEST046552)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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