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Species belonging to selected taxon:

Antirrhinum majus, Coffea canephora, Fraxinus excelsior, Ipomoea batatas, Mimulus guttatus, Mimulus guttatus var. nasutus, Mimulus lewisii, Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Ocimum basilicum, Petunia axillaris subsp. axillaris, Salvia miltiorrhiza, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Striga hermonthica, Triphysaria pusilla, Triphysaria versicolor, Capsicum annuum, Catharanthus roseus, Solanum tuberosum, Ipomoea nil



ABOUT THIS RECORD

ID: MNEST008943
species: Ipomoea nil
miRNA family: MIR169
source: miRNEST

Taxonomy by NCBI:
Ipomoea nil Ipomoea Ipomoeeae Convolvulaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CAGCCAAGGATGACTTGCCGG

miRNA*
 GGCGAGTTGTCCTTGGCTACA

mismatches: 1
bulges: 0
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pre-miRNA
 TACATAATCTCATCAATGGCCTTGCATGTTGGCGCAGGAAGCAGGTGGATGCAGCCAAGGATGACTTGCCGGCCGGTGAACTCTTCCTCCTATTGCGGCG
GACCCAACCATATATCCACCGCTCCGTACACTCTCAGGGTGACGAAAAGTTTGTAAGTTGGCGAGTTGTCCTTGGCTACATCTTCCTGTCTGCCCTTCAA
GCCAGGCTTTGGGTGACATATATACATA

dot-bracket secondary structure
......((.(((((...(((((.((.((..((.((((...(((((.(((((.(((((((((((((((((((((..(((((((.(((.((.(((.((((.(
((............))).))))...))).((((...)))))).))).)))))))..))))))))))))))))))))).))))).)))))))))))..)).
)).)))))...))))).)).........


SIMILARITIES
miRBase osa-MIR169p: 0.0000000008

PMRD osa-miRf11416-akr: 0.0000000008

microPC miR169: 4e-67		UniProt no hits

RFAM MIR169_2: 0.00000001		most similar mature miRNAs

Identical with: miR169 from microPC (MNEST046552)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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