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Species belonging to selected taxon:

Ipomoea batatas, Ipomoea nil



ABOUT THIS RECORD

ID: MNEST008950
species: Ipomoea nil
miRNA family: MIR394
source: miRNEST

Taxonomy by NCBI:
Ipomoea nil Ipomoea Ipomoeeae Convolvulaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 AGGTGGGCATACTGCCAACAG

miRNA*
 TTGGCATTCTGTCCACCTCC

mismatches: 5
bulges: 0
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pre-miRNA
 CATTTTCATGGAGGTTTGGCAAAGGGTTTCCTACAGAGCTTATTGGCATTCTGTCCACCTCCACTATTTTTTGACCCAAAAAAAAGAAGAAATCTATTAT
GGTAGAGGTGGGCATACTGCCAACAGAGATCTGTGGGTTTCTCTTTGTAAAACTCCCGTGATACT

dot-bracket secondary structure
.....((((((.(((((.((((((((...((((((((.(((.((((((...((((((((((.(((((((((((...))))))..(((.....)))...))
))).))))))))))...))))))..))).))))))))...)))))))).))))).))))))....


SIMILARITIES
miRBase ghr-MIR394a: 0.000000000000002

PMRD ptc-miRf10096-akr: 0.0000000000001

microPC miR394: 4e-26		UniProt no hits

RFAM MIR394: 0.000000003		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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