miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Caenorhabditis elegans, Ancylostoma caninum, Ascaris suum, Heterorhabditis bacteriophora, Brachionus plicatilis, Pristionchus pacificus, Caenorhabditis japonica, Caenorhabditis brenneri, Strongyloides ratti, Brugia malayi, Trichinella spiralis, Meloidogyne hapla, Heterodera glycines, Meloidogyne incognita, Caenorhabditis remanei, Trichinella pseudospiralis, Onchocerca volvulus, Nippostrongylus brasiliensis, Meloidogyne chitwoodi, Globodera rostochiensis, Strongyloides stercoralis, Ancylostoma ceylanicum



ABOUT THIS RECORD

ID: MNEST008964
species: Ancylostoma caninum
miRNA family: mir-136
source: miRNEST

Taxonomy by NCBI:
Ancylostoma caninum Ancylostoma Ancylostomatinae Ancylostomatidae Ancylostomatoidea Strongylida Rhabditida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 ACTCCATTTGTTTTGATGATG

miRNA*
 TCATCGTCTCAAATGAGTCT

mismatches: 3
bulges: 1
View larger
pre-miRNA
 TTGTGGGATGAGCCCTCGGAGGACTCCATTTGTTTTGATGATGGATTCTTACGCTCCATCATCGTCTCAAATGAGTCTTCAGAGGGTTCTATCATTT

dot-bracket secondary structure
..((((...((((((((.((((((((.(((((...((((((((((.........))))))))))...))))))))))))).))))))))..))))..


SIMILARITIES
miRBase oar-mir-136: 5e-46

PMRD no hits

microPC no hits		UniProt no hits

RFAM mir-136: 5e-40		most similar mature miRNAs

Identical with: ssc-mir-136 from miRBase (MNEST033988)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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