miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Parthenium argentatum, Zinnia violacea, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST000897
species: Helianthus tuberosus
miRNA family: MIR156
source: miRNEST

Taxonomy by NCBI:
Helianthus tuberosus Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGACAGAAGAGAGTGAGCACA

miRNA*
 TGCTCATGATCTATCTGTCAGC

mismatches: 3
bulges: 1
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pre-miRNA
 GGGAGTGATAAGAGATAGAGTTGACAGAAGAGAGTGAGCACACAAAGGCAAATTGTACCAATTTGTGTTGTATGATTGTTTTGGGTGCTCATGATCTATC
TGTCAGCTTCTTCTTACTCTATTTC

dot-bracket secondary structure
.(((((((.((((.....(((((((((((((..((((((((.(((((...((((((((((.....))..)))))))).))))).))))))))..))).))
)))))))))))).))))))).....


SIMILARITIES
miRBase ath-MIR156d: 0.0000000004

PMRD ath-miRf10567-akr: 0.0000000004

microPC miR156: 2e-42		UniProt no hits

RFAM mir-156: 0.000000007		most similar mature miRNAs

Identical with: miR156 from microPC (MNEST045065)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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