miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Panax ginseng, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST000897
species: Helianthus tuberosus
miRNA family: MIR156
source: miRNEST

Taxonomy by NCBI:
Helianthus tuberosus Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGACAGAAGAGAGTGAGCACA

miRNA*
 TGCTCATGATCTATCTGTCAGC

mismatches: 3
bulges: 1
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pre-miRNA
 GGGAGTGATAAGAGATAGAGTTGACAGAAGAGAGTGAGCACACAAAGGCAAATTGTACCAATTTGTGTTGTATGATTGTTTTGGGTGCTCATGATCTATC
TGTCAGCTTCTTCTTACTCTATTTC

dot-bracket secondary structure
.(((((((.((((.....(((((((((((((..((((((((.(((((...((((((((((.....))..)))))))).))))).))))))))..))).))
)))))))))))).))))))).....


SIMILARITIES
miRBase ath-MIR156d: 0.0000000004

PMRD ath-miRf10567-akr: 0.0000000004

microPC miR156: 2e-42		UniProt no hits

RFAM mir-156: 0.000000007		most similar mature miRNAs

Identical with: miR156 from microPC (MNEST045065)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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