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Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST000898
species: Helianthus tuberosus
miRNA family: MIR159
source: miRNEST

Taxonomy by NCBI:
Helianthus tuberosus Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTTGGATTGAAGGGAGCTCTA

miRNA*
 GAGCTCCTTAAAGTCCAATAG

mismatches: 3
bulges: 0
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pre-miRNA
 GTGGGATGAAGTAGAGCTCCTTAAAGTCCAATAGAAGATCTGAGTGAGAACATAGAGCTGCTAGTTTATGGATCCCTCAAGTCCTATCTTTGTTGATGTA
TAGGCTTTGTGGCTTGCATACACTTGGAGCTTTATTACCCTCCTTATGATCCTTTTTTGGATTGAAGGGAGCTCTACACCATCATA

dot-bracket secondary structure
....((((..((((((((((((..(((((((.(((.((((((((.(((...((((((((...(((.((((((.((..((((.(((((............)
)))).)))).)).)).)))).)))...))))))))....))))))).)))).))).)))))))..))))))))))))..))))...


SIMILARITIES
miRBase vvi-MIR159c: 0.000000002

PMRD vvi-miR159c: 0.000000002

microPC miR159: 2e-90		UniProt no hits

RFAM MIR159: 0.00000005		most similar mature miRNAs

Identical with: miR159 from microPC (MNEST045888)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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