miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Mus musculus, Sus scrofa, Bos taurus, Rattus norvegicus, Canis lupus familiaris, Ovis aries, Macaca fascicularis, Papio anubis, Homo sapiens, Peromyscus maniculatus bairdii, Pongo abelii, Ursus americanus, Equus caballus, Oryctolagus cuniculus, Macaca nemestrina, Cavia porcellus, Bos indicus, Bos sp., Peromyscus polionotus subgriseus, Capra hircus, Pan troglodytes verus, Macaca mulatta



ABOUT THIS RECORD

ID: MNEST008986
species: Peromyscus maniculatus bairdii
miRNA family: mir-873
source: miRNEST

Taxonomy by NCBI:
Peromyscus maniculatus bairdii Peromyscus maniculatus Peromyscus Neotominae Cricetidae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGCAGGATCTTGTGAGGCTCT

miRNA*
 GCCTCATTCAGATCCTGGTAG

mismatches: 3
bulges: 2
View larger
pre-miRNA
 TGTCCCACCCAGGCCTCATTCAGATCCTGGTAGAAGAGATGTTGCCCCATTGTGAGGTCCTTGGTGCTGACTGGGCCCAGGGCCTGAAGCTGGAGCCAGA
CCAGCAGCCTCAGGACACATCTAGCCCAGGCTCTCCCTAGCCTGTAGTCCCACTCTTGCAGGATCTTGTGAGGCTCTGAGGAGTGT

dot-bracket secondary structure
.......((((((((((((..((((((((..(((..((((((.(((.((...)).)))((((((.(((.....)))))))))(((((.(((((.......
)))))....)))))..)))))).((.((((((......))))))..)).....)))..)))))))).))))))).))).)).....


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt sp|Q9D7K5|AT5SL_MOUSE: 0.00000000000001

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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