miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Parthenium argentatum, Zinnia violacea, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST000899
species: Helianthus tuberosus
miRNA family: MIR393
source: miRNEST

Taxonomy by NCBI:
Helianthus tuberosus Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCCAAAGGGATCGCATTGATC

miRNA*
 TCATGCGATCTCTTCGGAAG

mismatches: 1
bulges: 1
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pre-miRNA
 CAGCGGGTTGAAGCTTCCAAAGGGATCGCATTGATCCATCTGTCCACTCGGATTTCAATCTCAGTTGATAATTTGGATCATGCGATCTCTTCGGAAGCTT
CCTCCATCG

dot-bracket secondary structure
....(((..(((((((((.((((((((((((.((((((..((((.(((.((((....)))).))).))))...)))))))))))))))))).))))))))
).)))....


SIMILARITIES
miRBase zma-MIR393b: 0.0000003

PMRD zma-miR393f: 0.0000003

microPC miR393: 5e-40		UniProt no hits

RFAM no hits		most similar mature miRNAs

Identical with: miR393 from microPC (MNEST044833)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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