miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Actinidia chinensis, Actinidia deliciosa, Actinidia eriantha, Antirrhinum majus, Barnadesia spinosa, Cichorium intybus, Coffea canephora, Fraxinus excelsior, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Ipomoea batatas, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Mimulus guttatus, Mimulus guttatus var. nasutus, Mimulus lewisii, Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Ocimum basilicum, Panax ginseng, Parthenium argentatum, Petunia axillaris subsp. axillaris, Salvia miltiorrhiza, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Striga hermonthica, Taraxacum kok-saghyz, Taraxacum officinale, Triphysaria pusilla, Triphysaria versicolor, Zinnia violacea, Capsicum annuum, Carthamus tinctorius, Catharanthus roseus, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus, Solanum tuberosum, Ipomoea nil



ABOUT THIS RECORD

ID: MNEST000900
species: Helianthus tuberosus
miRNA family: MIR414
source: miRNEST

Taxonomy by NCBI:
Helianthus tuberosus Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCCTCCTCATCATCATCTTCT

miRNA*
 CATTGATGATGGGAGAAGAGA

mismatches: 4
bulges: 2
View larger
pre-miRNA
 ATTGTCTTCACTTGAACCCTTCATCATCACATTCATTAACTTTCCTTTATATTTACCTTTAAATTTCTTCCTCCTCCTCATCATCATCTTCTTCATCTCA
ACAAAATGAGAAAAGCTTAGAGCTTTTTTCAGTAGGAGCAGCAGCAGTAACAACCAATTAATTCAACACCAACCACTTTCACCTACGAATCCTTAACTTC
AAACTCACAAATCTTGGGTTGATTTTCAAGTAACAAAAAAACACAAAAATGGATTCATATGAAGCAACAAGAATTGTGTTCACAAAGCTCCAAACTTTAG
ACCCTCAAAACGCATCCAAAATCATGGGTCTTCTTCTCATTCAAGATCACGGTGAAAATGAAATGATTCGGATGGCCACTGCTGCAACAGCATTGATGAT
GGGAGAAGAGATGAACAACTTCGGTCGGTTAAGAAACGATTTCTTGATGGGTATGGTAAACCCGGGTTCGAGGCAAATT

dot-bracket secondary structure
..........(((((((((......((((.(((((((((...((.(((...((.(((.((.((.((.((((((.((((((((((((....((....(((.
......(((((((((((...)))))))))))....)))..((((((((..((.(((((((.((((...........(((((((...((((((...((((.
(((.(((............))).))).))))...................))))))...((((...((((...)))).)))).((((.......))))((
((((.....................))))))((((.......))))....))))))).)))).))))).)).))...))))))))...))...)))))))
))).)).)))..))).)).)).))..))).)).))).))....))))))))).))))......))))))))).......


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt sp|Q9SV09|C3H46_ARATH: 0.0000000000005

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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