miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST000901
species: Helianthus tuberosus
miRNA family: MIR403
source: miRNEST

Taxonomy by NCBI:
Helianthus tuberosus Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTAGATTCACGCACAAACTCG

miRNA*
 TGTTTGTGCGTGAATCTAAGG

mismatches: 1
bulges: 0
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pre-miRNA
 AGCCATATTTCGTGTTTGTGCGTGAATCTAAGGATCCTTAATCTTATCACATCACCAGTAAGTAATCATACTTTTTCTTTGTCTGTTTGTTGCCAGACAG
GATCTGTTGGTTCGTTAGATTCACGCACAAACTCGTAATATGTC

dot-bracket secondary structure
...((((((.((.((((((((((((((((((.((.((..........((.(((...((.(((((....)))))...))(((((((........)))))))
))).))..)).)).)))))))))))))))))).)).))))))..


SIMILARITIES
miRBase tcc-MIR403a: 0.00000003

PMRD stu-miR403: 0.000000007

microPC miR403: 1e-66		UniProt no hits

RFAM MIR403: 0.000002		most similar mature miRNAs

Identical with: miR403 from microPC (MNEST046234)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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