miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST000901
species: Helianthus tuberosus
miRNA family: MIR403
source: miRNEST

Taxonomy by NCBI:
Helianthus tuberosus Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTAGATTCACGCACAAACTCG

miRNA*
 TGTTTGTGCGTGAATCTAAGG

mismatches: 1
bulges: 0
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pre-miRNA
 AGCCATATTTCGTGTTTGTGCGTGAATCTAAGGATCCTTAATCTTATCACATCACCAGTAAGTAATCATACTTTTTCTTTGTCTGTTTGTTGCCAGACAG
GATCTGTTGGTTCGTTAGATTCACGCACAAACTCGTAATATGTC

dot-bracket secondary structure
...((((((.((.((((((((((((((((((.((.((..........((.(((...((.(((((....)))))...))(((((((........)))))))
))).))..)).)).)))))))))))))))))).)).))))))..


SIMILARITIES
miRBase tcc-MIR403a: 0.00000003

PMRD stu-miR403: 0.000000007

microPC miR403: 1e-66		UniProt no hits

RFAM MIR403: 0.000002		most similar mature miRNAs

Identical with: miR403 from microPC (MNEST046234)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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