miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Oryzias latipes, Salmo salar, Oncorhynchus mykiss, Gasterosteus aculeatus, Gadus morhua, Oreochromis niloticus, Fundulus heteroclitus, Sparus aurata, Dicentrarchus labrax, Dissostichus mawsoni, Osmerus mordax, Anoplopoma fimbria, Esox lucius, Takifugu rubripes, Sebastes caurinus, Perca flavescens, Paralabidochromis chilotes, Hippoglossus hippoglossus, Poecilia reticulata, Oncorhynchus tshawytscha, Paralichthys olivaceus, Psetta maxima, Lates calcarifer, Oncorhynchus nerka, Sebastes rastrelliger, Thymallus thymallus, Solea senegalensis, Coregonus clupeaformis, Thunnus thynnus, Cynoglossus semilaevis, Salvelinus fontinalis

ABOUT THIS RECORD

ID: MNEST009011
species: Fundulus heteroclitus
miRNA family: mir-143
source: miRNEST

Taxonomy by NCBI:
Fundulus heteroclitus Fundulus Fundulidae Cyprinodontoidei Cyprinodontiformes Atherinomorpha Smegmamorpha Percomorpha Euacanthopterygii Acanthopterygii Holacanthopterygii Euacanthomorpha Acanthomorpha Ctenosquamata Eurypterygii Neoteleostei Neognathi Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
GATGCAGTGCTGCATCTCTGG

miRNA*
TGAGATGAAGCACTGTAGCTC

mismatches: 4
bulges: 0

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pre-miRNA
CTGCTTATTCCTGTGACCCATGATGCAGTGCTGCATCTCTGGTCAGTTGTAGTCTGAGATGAAGCACTGTAGCTCGGGACAGAGAAAAACAAT

dot-bracket secondary structure
.......(((((((..(((....(((((((((.((((((.((..........)).)))))).)))))))))....))))))).))).......

SIMILARITIES

miRBase xtr-mir-143: 1e-21

PMRD no hits

microPC no hits

UniProt no hits

RFAM mir-143: 2e-24

most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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