ABOUT THIS RECORDspecies: Choristoneura fumiferana
miRNA family: miR-10a
source: miRNEST
Taxonomy by NCBI:
Choristoneura fumiferana Choristoneura Archipini Tortricinae Tortricidae Tortricoidea Apoditrysia Ditrysia Heteroneura Neolepidoptera Glossata Lepidoptera Amphiesmenoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAAATTCGTGCCTTGGGGAAA miRNA* GTTCTAGGTCGAATATTGT mismatches: 4 bulges: 2 |
pre-miRNA
ATGAACTTGCCAAAATTCGTGCCTTGGGGAAATTTAATAATGATGGAATGGTTCTAGGTCGAATATTGTACTTATTT
dot-bracket secondary structure
..........(((.(((((...(((((((..((((.((....)).))))..))))))).))))).))).........
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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ATGAACTTGCCAAAATTCGTGCCTTGGGGAAATTTAATAATGATGGAATGGTTCTAGGTCGAATATTGTACTTATTT
dot-bracket secondary structure
..........(((.(((((...(((((((..((((.((....)).))))..))))))).))))).))).........
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
