miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Bicyclus anynana, Bombyx mori, Choristoneura fumiferana, Spodoptera frugiperda, Heliothis virescens, Antheraea assama, Spodoptera littoralis, Samia cynthia ricini, Danaus plexippus, Papilio xuthus, Ostrinia nubilalis, Trichoplusia ni, Epiphyas postvittana



ABOUT THIS RECORD

ID: MNEST009021
species: Choristoneura fumiferana
miRNA family: miR-2723
source: miRNEST

Taxonomy by NCBI:
Choristoneura fumiferana Choristoneura Archipini Tortricinae Tortricidae Tortricoidea Apoditrysia Ditrysia Heteroneura Neolepidoptera Glossata Lepidoptera Amphiesmenoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CCAGCAGTGGACGTCTTTCGG

miRNA*
 GGGAGACGAGCTGTCGGTA

mismatches: 2
bulges: 2
View larger
pre-miRNA
 CGTCTGCGGACCGGGAGACGAGCTGTCGGTAGGCCTCCAACTAGATGGAGCGACGACCTGGTTAAGATCGCGGGATCGCGGTGGATGCGGAAAGCACACG
ACCGGTCTGAGTGGAGAGCCTTGGGGGAGGCCTATGTCCAGCAGTGGACGTCTTTCGGCTGACATAA

dot-bracket secondary structure
....(((((.((((((((((.(((((.(((((((((((..(((...((.((...((((.((((...((((((....))))))...(((.....)))...)
)))))))...))......)).))).)))))))))...)).)))))...))))))))))))).))...


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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