ABOUT THIS RECORDspecies: Sparus aurata
miRNA family: mir-1322
source: miRNEST
Taxonomy by NCBI:
Sparus aurata Sparus Sparidae Percoidei Perciformes Percomorpha Euacanthopterygii Acanthopterygii Holacanthopterygii Euacanthomorpha Acanthomorpha Ctenosquamata Eurypterygii Neoteleostei Neognathi Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCTGCTGCTGCTGATGCTACT miRNA* GACATGTCAGAGCAGTCGCTC mismatches: 4 bulges: 2 |
pre-miRNA
CTGCCCAGGTAGGAGGACATGTCAGAGCAGTCGCTCATGCATTCATAGGAACGACCCTGGAAGTTCCTGTCCTCGTAGAAGATGATCTTGCCCATGCTCA
TATCAGTGGTGGTCATACTTGTAATTGAGCTGCTGCTGCTGCTGATGCTACTGCTACCTGCCCG
dot-bracket secondary structure
.....(((((((.((....((((((((((((.((....((....((((((((..........))))))))..((.((.(((((((((....((((.....
.....)))).)))))).))).))...)))).)).)))))).))))))...)).)))))))....
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CTGCCCAGGTAGGAGGACATGTCAGAGCAGTCGCTCATGCATTCATAGGAACGACCCTGGAAGTTCCTGTCCTCGTAGAAGATGATCTTGCCCATGCTCA
TATCAGTGGTGGTCATACTTGTAATTGAGCTGCTGCTGCTGCTGATGCTACTGCTACCTGCCCG
dot-bracket secondary structure
.....(((((((.((....((((((((((((.((....((....((((((((..........))))))))..((.((.(((((((((....((((.....
.....)))).)))))).))).))...)))).)).)))))).))))))...)).)))))))....
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|P28022|CRGM3_CYPCA: 0.0000000009 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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