miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Oryzias latipes, Gasterosteus aculeatus, Gadus morhua, Oreochromis niloticus, Fundulus heteroclitus, Sparus aurata, Dicentrarchus labrax, Dissostichus mawsoni, Anoplopoma fimbria, Takifugu rubripes, Sebastes caurinus, Perca flavescens, Paralabidochromis chilotes, Hippoglossus hippoglossus, Poecilia reticulata, Paralichthys olivaceus, Psetta maxima, Lates calcarifer, Sebastes rastrelliger, Solea senegalensis, Thunnus thynnus, Cynoglossus semilaevis

ABOUT THIS RECORD

ID: MNEST009036
species: Sparus aurata
miRNA family: mir-202
source: miRNEST

Taxonomy by NCBI:
Sparus aurata Sparus Sparidae Percoidei Perciformes Percomorpha Euacanthopterygii Acanthopterygii Holacanthopterygii Euacanthomorpha Acanthomorpha Ctenosquamata Eurypterygii Neoteleostei Neognathi Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
TTCCTATGCATATACCTTTTT

miRNA*
AGAGGCATAGGGCATGGGAAAA

mismatches: 2
bulges: 1

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pre-miRNA
CTTTGCACTCGCTGTTCCTTTTTCCTATGCATATACCTTTTTCAGATGTAACTTTAAAGAGGCATAGGGCATGGGAAAATGGGGCTGCAGAGGTATT

dot-bracket secondary structure
...(((.(((((.(((((.(((((((((((.(((.(((((((.((.......)).))))))).)))..))))))))))).))))).)).))))))..

SIMILARITIES

miRBase fru-mir-202: 2e-33

PMRD no hits

microPC no hits

UniProt no hits

RFAM mir-202: 5e-31

most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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