ABOUT THIS RECORDspecies: Crassostrea gigas
miRNA family: miR-66
source: miRNEST
Taxonomy by NCBI:
Crassostrea gigas Crassostrea Ostreidae Ostreoidea Ostreoida Pteriomorphia Bivalvia Mollusca Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CATGACACTGATTACAGATGC miRNA* ATCTCGAAATTCAATGTCATCAG mismatches: 4 bulges: 2 |
pre-miRNA
AAGTATATAAAATGTATAAAGTATCTCGAAATTCAATGTCATCAGAAAGATTTCACATATCCCGCCGTCCTCTGATTGGATCAGACCCCCGGAGACCTGT
TGGGTTTTATCTGGAAATCGTCATTGACAGAAGACGAAACGGAATGTTCAGCAAATCGATCTTCATGACACTGATTACAGATGCGTTATACAAAATGGAA
GTA
dot-bracket secondary structure
............(((((((.((((((..((..(((.((((((.(((..(((((...((((.(((.((((.((((..(((....((...((((((((((..
.)))))...)))))...)).)))....)))).))))...))).)))).....)))))..)))..)))))).)))))..)))))).)))))))..((....
)).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
AAGTATATAAAATGTATAAAGTATCTCGAAATTCAATGTCATCAGAAAGATTTCACATATCCCGCCGTCCTCTGATTGGATCAGACCCCCGGAGACCTGT
TGGGTTTTATCTGGAAATCGTCATTGACAGAAGACGAAACGGAATGTTCAGCAAATCGATCTTCATGACACTGATTACAGATGCGTTATACAAAATGGAA
GTA
dot-bracket secondary structure
............(((((((.((((((..((..(((.((((((.(((..(((((...((((.(((.((((.((((..(((....((...((((((((((..
.)))))...)))))...)).)))....)))).))))...))).)))).....)))))..)))..)))))).)))))..)))))).)))))))..((....
)).
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
