ABOUT THIS RECORDspecies: Crassostrea gigas
miRNA family: miR-2293
source: miRNEST
Taxonomy by NCBI:
Crassostrea gigas Crassostrea Ostreidae Ostreoidea Ostreoida Pteriomorphia Bivalvia Mollusca Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCTGTTGTTGTTTTGTATTC miRNA* ATAACATCACAACCTATCGCATA mismatches: 4 bulges: 2 |
pre-miRNA
TCTGCAAATTGAATAACATCACAACCTATCGCATACATTTTCCTTTCCTTTTCAATTCAGCTGGNTCAGATTTTAACTCACTATTTGTGTTTAATCTATT
AAATTCAGCTCANTAGCTCAGCATCAGCTGAAGGCGCATCCATTTTTAATATTGTTGCTGTTGTTGTTTTGTATTCATACGCGCC
dot-bracket secondary structure
..(((....((((((.((..(((((..((.(((.(((.((...............(((((((((...(((((..(((.((.....)).))).)))))...
...((.((((....)))).))..)))))))))...............))...)))))).)).)))))..))))))))...)))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
Source sequences
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TCTGCAAATTGAATAACATCACAACCTATCGCATACATTTTCCTTTCCTTTTCAATTCAGCTGGNTCAGATTTTAACTCACTATTTGTGTTTAATCTATT
AAATTCAGCTCANTAGCTCAGCATCAGCTGAAGGCGCATCCATTTTTAATATTGTTGCTGTTGTTGTTTTGTATTCATACGCGCC
dot-bracket secondary structure
..(((....((((((.((..(((((..((.(((.(((.((...............(((((((((...(((((..(((.((.....)).))).)))))...
...((.((((....)))).))..)))))))))...............))...)))))).)).)))))..))))))))...)))..
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
Source sequences
download this record
