ABOUT THIS RECORDspecies: Crassostrea gigas
miRNA family: mir-3065
source: miRNEST
Taxonomy by NCBI:
Crassostrea gigas Crassostrea Ostreidae Ostreoidea Ostreoida Pteriomorphia Bivalvia Mollusca Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAGCACCAGGATATTGTGGA miRNA* CAGGATGTAGATGGTCTCACA mismatches: 3 bulges: 2 |
pre-miRNA
GCGGTGAGTTGTGAGCACCAGGATATTGTGGAAAGACTGCTGAAGACCAGCATCAACCTAAAGCTTCAGGATGTAGATGGTCTCACAATTACAGA
dot-bracket secondary structure
...((((.(((((((.((((..(((((.((((.....(((((.....)))))............)))).)))))...)))))))))))))))...
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GCGGTGAGTTGTGAGCACCAGGATATTGTGGAAAGACTGCTGAAGACCAGCATCAACCTAAAGCTTCAGGATGTAGATGGTCTCACAATTACAGA
dot-bracket secondary structure
...((((.(((((((.((((..(((((.((((.....(((((.....)))))............)))).)))))...)))))))))))))))...
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
