ABOUT THIS RECORDspecies: Dicentrarchus labrax
miRNA family: mir-1422
source: miRNEST
Taxonomy by NCBI:
Dicentrarchus labrax Dicentrarchus Moronidae Percoidei Perciformes Percomorpha Euacanthopterygii Acanthopterygii Holacanthopterygii Euacanthomorpha Acanthomorpha Ctenosquamata Eurypterygii Neoteleostei Neognathi Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAAACAGCATCTGGATCGACA miRNA* GTGATCTGGATCGTTTTAC mismatches: 4 bulges: 2 |
pre-miRNA
AGTTCATTTACAGGAGCAGAGAAAACAGCATCTGGATCGACACAGACTACAAACAAAGACATCATTACATTACATTCAAACGGTGGTGCCTTAAACATAA
GTGCAAGTGGACGGCTTTCTTCATACACATTGATCTTAGCAGCCTGCTCCTGGACCAGGTTTACTGAGTGATCTGGATCGTTTTACATCAGTTCATGT
dot-bracket secondary structure
.........(((.((((.((.(((((...((((((((((...((((((((................................)))))((((((....)))
).)).(((((...(((....(((.......)))....)))...)))))((((...))))....)))..)))))))))).)))))...)).)))).)))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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AGTTCATTTACAGGAGCAGAGAAAACAGCATCTGGATCGACACAGACTACAAACAAAGACATCATTACATTACATTCAAACGGTGGTGCCTTAAACATAA
GTGCAAGTGGACGGCTTTCTTCATACACATTGATCTTAGCAGCCTGCTCCTGGACCAGGTTTACTGAGTGATCTGGATCGTTTTACATCAGTTCATGT
dot-bracket secondary structure
.........(((.((((.((.(((((...((((((((((...((((((((................................)))))((((((....)))
).)).(((((...(((....(((.......)))....)))...)))))((((...))))....)))..)))))))))).)))))...)).)))).)))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
