ABOUT THIS RECORDspecies: Dicentrarchus labrax
miRNA family: miR-1928
source: miRNEST
Taxonomy by NCBI:
Dicentrarchus labrax Dicentrarchus Moronidae Percoidei Perciformes Percomorpha Euacanthopterygii Acanthopterygii Holacanthopterygii Euacanthomorpha Acanthomorpha Ctenosquamata Eurypterygii Neoteleostei Neognathi Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AACTACATTGCCAGCTGGGTG miRNA* CCTGGCGGGCATCCTGGTGG mismatches: 4 bulges: 1 |
pre-miRNA
AGTGACCTATGTGTTGAATATTTGTGTGCCCAACTACATTGCCAGCTGGGTGGAGCTCGTGCTGATCTATCTGATCGCTCCCGGGACCTCTTTGATTGGC
CACCTGGCGGGCATCCTGGTGGGTCTGCTCTACACTGTANGTCCACTGGA
dot-bracket secondary structure
((((((.(((((((.((......(((.(((((.(((...((((.(((((((((..((((.((.((((.....))))))...))))..............)
)))))))).))))...)))))))).))))).)))).))).)).))))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
Source sequences
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AGTGACCTATGTGTTGAATATTTGTGTGCCCAACTACATTGCCAGCTGGGTGGAGCTCGTGCTGATCTATCTGATCGCTCCCGGGACCTCTTTGATTGGC
CACCTGGCGGGCATCCTGGTGGGTCTGCTCTACACTGTANGTCCACTGGA
dot-bracket secondary structure
((((((.(((((((.((......(((.(((((.(((...((((.(((((((((..((((.((.((((.....))))))...))))..............)
)))))))).))))...)))))))).))))).)))).))).)).))))...
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|Q8TEB9|RHBD1_HUMAN: 0.0000000004 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
Source sequences
download this record
