miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Caenorhabditis elegans, Ancylostoma caninum, Ascaris suum, Heterorhabditis bacteriophora, Brachionus plicatilis, Pristionchus pacificus, Caenorhabditis japonica, Caenorhabditis brenneri, Strongyloides ratti, Brugia malayi, Trichinella spiralis, Meloidogyne hapla, Heterodera glycines, Meloidogyne incognita, Caenorhabditis remanei, Trichinella pseudospiralis, Onchocerca volvulus, Nippostrongylus brasiliensis, Meloidogyne chitwoodi, Globodera rostochiensis, Strongyloides stercoralis, Ancylostoma ceylanicum

ABOUT THIS RECORD

ID: MNEST009124
species: Heterorhabditis bacteriophora
miRNA family: miR-1719
source: miRNEST

Taxonomy by NCBI:
Heterorhabditis bacteriophora Heterorhabditis Heterorhabditidae Rhabditoidea Rhabditida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
AGTGATGATGAGTTGCTGATC

miRNA*
TCGAACGAGTCATTACTTC

mismatches: 3
bulges: 2

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pre-miRNA
CATGCCCATTTAATTAGAACGAGTGATGATGAGTTGCTGATCGGCCATCGAACGAGTCATTACTTCCTTCTCGAGTATCCTATT

dot-bracket secondary structure
...............((((.((((((((((..(((..((((.....)))))))..))))))))))..)))).............

SIMILARITIES

miRBase no hits

PMRD no hits

microPC no hits

UniProt no hits

RFAM no hits

most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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