miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Litopenaeus vannamei, Lepeophtheirus salmonis, Daphnia pulex, Petrolisthes cinctipes, Penaeus monodon, Artemia franciscana, Caligus rogercresseyi, Homarus americanus, Eriocheir sinensis, Carcinus maenas, Lernaeocera branchialis, Caligus clemensi, Daphnia magna, Gammarus pulex, Calanus finmarchicus, Callinectes sapidus, Fenneropenaeus chinensis

ABOUT THIS RECORD

ID: MNEST009211
species: Penaeus monodon
miRNA family: miR-1804
source: miRNEST

Taxonomy by NCBI:
Penaeus monodon Penaeus Penaeidae Penaeoidea Dendrobranchiata Decapoda Eucarida Eumalacostraca Malacostraca Crustacea Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
GCAGAAGTTGTTAAAGCTGCT

miRNA*
CAGCAGTAGCAGAGCTGTCT

mismatches: 5
bulges: 1

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pre-miRNA
TCTTTGCAGCAGTAGCAGAGCTGTCTGAGAAAAAGGCAGAAGTTGTTAAAGCTGCTCAA

dot-bracket secondary structure
.....(((((..((((((..((((((.......))))))...))))))..)))))....

SIMILARITIES

miRBase no hits

PMRD no hits

microPC no hits

UniProt no hits

RFAM no hits

most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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