miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Litopenaeus vannamei, Lepeophtheirus salmonis, Daphnia pulex, Petrolisthes cinctipes, Penaeus monodon, Artemia franciscana, Caligus rogercresseyi, Homarus americanus, Eriocheir sinensis, Carcinus maenas, Lernaeocera branchialis, Caligus clemensi, Daphnia magna, Gammarus pulex, Calanus finmarchicus, Callinectes sapidus, Fenneropenaeus chinensis



ABOUT THIS RECORD

ID: MNEST009238
species: Artemia franciscana
miRNA family: miR-2345
source: miRNEST

Taxonomy by NCBI:
Artemia franciscana Artemia Artemiidae Anostraca Sarsostraca Branchiopoda Crustacea Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CTTGTGTGTTTTCTTCTTTCT

miRNA*
 CGAGAAGAGGTAATGAAAGCG

mismatches: 5
bulges: 0
View larger
pre-miRNA
 TAAAAATAACGTCGAGAAGAGGTAATGAAAGCGAAGCTGACGAACTTGATAAAAAAGGAGCTACATCTTCCAGCAAGAAAACTTATGATTATCCGACCAA
ATTGAACTACCTGTTTCGAGATGCTCGCTTTTTTCTGATCAAAAGTAATAATCAGGAGAATATCGATTTGGCAATGTCGCTTGTGTGTTTTCTTCTTTCT
GTTTTCTGC

dot-bracket secondary structure
.......((((..(((((((((..(((.((((((.(((((.....((((((.(((((((((...(((((..((((.........................
...........))))..))))))))).)))))(((((((...........)))))))...)))))).)))))....)))))).)))..)))))))))..)
)))......


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt sp|Q96MU7|YTDC1_HUMAN: 0.0001

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record




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