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Species belonging to selected taxon:
Caenorhabditis elegans
,
Ancylostoma caninum
,
Ascaris suum
,
Heterorhabditis bacteriophora
,
Pristionchus pacificus
,
Caenorhabditis japonica
,
Caenorhabditis brenneri
,
Strongyloides ratti
,
Brugia malayi
,
Trichinella spiralis
,
Meloidogyne hapla
,
Heterodera glycines
,
Meloidogyne incognita
,
Caenorhabditis remanei
,
Trichinella pseudospiralis
,
Onchocerca volvulus
,
Nippostrongylus brasiliensis
,
Meloidogyne chitwoodi
,
Globodera rostochiensis
,
Strongyloides stercoralis
,
Ancylostoma ceylanicum
ABOUT THIS RECORD
ID:
MNEST009245
species:
Pristionchus pacificus
miRNA family:
miR-2840
source:
miRNEST
Taxonomy by NCBI:
Pristionchus pacificus
Pristionchus
Neodiplogasteridae
Diplogasterida
Chromadorea
Nematoda
Pseudocoelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCGGAATTGGAAGAAGAGGAA
miRNA*
CTTCTTCTCCCATTCCTACT
mismatches:
3
bulges:
1
View larger
pre-miRNA
GGCCGGGGA
TCGGAATTGGAAGAAGAGGAA
GTTGTGATGGACGAATCTCCATCTCATCATGCATCCCATTCATCGCCTT
CTTCTTCTCCCATTCCTACT
C
CTCCT
dot-bracket secondary structure
....(((((
..(((((.(((.(((((((((
(.((.((((((......))))))....)).((............)))))
)))))))))).)))))...)
)
)))..
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record