miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Mus musculus, Sus scrofa, Bos taurus, Rattus norvegicus, Gallus gallus, Canis lupus familiaris, Ovis aries, Macaca fascicularis, Anolis carolinensis, Trichosurus vulpecula, Papio anubis, Homo sapiens, Taeniopygia guttata, Peromyscus maniculatus bairdii, Pongo abelii, Ursus americanus, Equus caballus, Oryctolagus cuniculus, Macaca nemestrina, Cavia porcellus, Bos indicus, Meleagris gallopavo, Lonchura striata domestica, Bos sp., Macropus eugenii, Peromyscus polionotus subgriseus, Capra hircus, Pan troglodytes verus, Macaca mulatta



ABOUT THIS RECORD

ID: MNEST009256
species: Equus caballus
miRNA family: miR-1682
source: miRNEST

Taxonomy by NCBI:
Equus caballus Equus subg. Equus Equus Equidae Perissodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGGGGGAGATGGAGCTGAGGC

miRNA*
 CTCAAGCCCCACTCTCCTCCTTT

mismatches: 3
bulges: 2
View larger
pre-miRNA
 CCACTACTGTTCCTCAAGCCCCACTCTCCTCCTTTGCTTTCACTTATTCTGCGTCAACCCATCCAGAGATCCCTCCCCTTCTCTCCCTGCCGGCCTAGTT
ATGGCAGAGAACGATGTGGACAATGAGCTCTTGGACTATGAAGATGATGAGGTGGAGACAGCAGCTGGGGGAGATGGAGCTGAGGCCCCTGCCAA

dot-bracket secondary structure
...........(((((.((.(((.((((((((.(((((.((.((..(((..((((......(((((((.((..(((...((..((.((((((........
.)))))).))..))...)))....)).))).)))).......))))..)))..)).)).)))))..))))))))))).)))))))..........


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt sp|Q5RE47|DX39B_PONAB: 0.00000000006

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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