ABOUT THIS RECORDspecies: Equus caballus
miRNA family: miR-1682
source: miRNEST
Taxonomy by NCBI:
Equus caballus Equus subg. Equus Equus Equidae Perissodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGGGGAGATGGAGCTGAGGC miRNA* CTCAAGCCCCACTCTCCTCCTTT mismatches: 3 bulges: 2 |
pre-miRNA
CCACTACTGTTCCTCAAGCCCCACTCTCCTCCTTTGCTTTCACTTATTCTGCGTCAACCCATCCAGAGATCCCTCCCCTTCTCTCCCTGCCGGCCTAGTT
ATGGCAGAGAACGATGTGGACAATGAGCTCTTGGACTATGAAGATGATGAGGTGGAGACAGCAGCTGGGGGAGATGGAGCTGAGGCCCCTGCCAA
dot-bracket secondary structure
...........(((((.((.(((.((((((((.(((((.((.((..(((..((((......(((((((.((..(((...((..((.((((((........
.)))))).))..))...)))....)).))).)))).......))))..)))..)).)).)))))..))))))))))).)))))))..........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CCACTACTGTTCCTCAAGCCCCACTCTCCTCCTTTGCTTTCACTTATTCTGCGTCAACCCATCCAGAGATCCCTCCCCTTCTCTCCCTGCCGGCCTAGTT
ATGGCAGAGAACGATGTGGACAATGAGCTCTTGGACTATGAAGATGATGAGGTGGAGACAGCAGCTGGGGGAGATGGAGCTGAGGCCCCTGCCAA
dot-bracket secondary structure
...........(((((.((.(((.((((((((.(((((.((.((..(((..((((......(((((((.((..(((...((..((.((((((........
.)))))).))..))...)))....)).))).)))).......))))..)))..)).)).)))))..))))))))))).)))))))..........
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|Q5RE47|DX39B_PONAB: 0.00000000006 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
