miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Sus scrofa, Bos taurus, Canis lupus familiaris, Ovis aries, Ursus americanus, Equus caballus, Bos indicus, Bos sp., Capra hircus



ABOUT THIS RECORD

ID: MNEST009256
species: Equus caballus
miRNA family: miR-1682
source: miRNEST

Taxonomy by NCBI:
Equus caballus Equus subg. Equus Equus Equidae Perissodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGGGGGAGATGGAGCTGAGGC

miRNA*
 CTCAAGCCCCACTCTCCTCCTTT

mismatches: 3
bulges: 2
View larger
pre-miRNA
 CCACTACTGTTCCTCAAGCCCCACTCTCCTCCTTTGCTTTCACTTATTCTGCGTCAACCCATCCAGAGATCCCTCCCCTTCTCTCCCTGCCGGCCTAGTT
ATGGCAGAGAACGATGTGGACAATGAGCTCTTGGACTATGAAGATGATGAGGTGGAGACAGCAGCTGGGGGAGATGGAGCTGAGGCCCCTGCCAA

dot-bracket secondary structure
...........(((((.((.(((.((((((((.(((((.((.((..(((..((((......(((((((.((..(((...((..((.((((((........
.)))))).))..))...)))....)).))).)))).......))))..)))..)).)).)))))..))))))))))).)))))))..........


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt sp|Q5RE47|DX39B_PONAB: 0.00000000006

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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