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Species belonging to selected taxon:
Mus musculus
,
Sus scrofa
,
Bos taurus
,
Danio rerio
,
Rattus norvegicus
,
Xenopus laevis
,
Oryzias latipes
,
Gallus gallus
,
Salmo salar
,
Canis lupus familiaris
,
Ictalurus punctatus
,
Ovis aries
,
Oncorhynchus mykiss
,
Gasterosteus aculeatus
,
Pimephales promelas
,
Gadus morhua
,
Macaca fascicularis
,
Anolis carolinensis
,
Trichosurus vulpecula
,
Papio anubis
,
Ictalurus furcatus
,
Homo sapiens
,
Petromyzon marinus
,
Oreochromis niloticus
,
Taeniopygia guttata
,
Peromyscus maniculatus bairdii
,
Fundulus heteroclitus
,
Sparus aurata
,
Dicentrarchus labrax
,
Pongo abelii
,
Ursus americanus
,
Equus caballus
,
Dissostichus mawsoni
,
Osmerus mordax
,
Oryctolagus cuniculus
,
Macaca nemestrina
,
Anoplopoma fimbria
,
Cyprinus carpio
,
Esox lucius
,
Squalus acanthias
,
Leucoraja erinacea
,
Rana catesbeiana
,
Takifugu rubripes
,
Cynops pyrrhogaster
,
Sebastes caurinus
,
Misgurnus anguillicaudatus
,
Perca flavescens
,
Paralabidochromis chilotes
,
Hippoglossus hippoglossus
,
Ambystoma tigrinum tigrinum
,
Cavia porcellus
,
Bos indicus
,
Rutilus rutilus
,
Meleagris gallopavo
,
Lonchura striata domestica
,
Poecilia reticulata
,
Bos sp.
,
Macropus eugenii
,
Peromyscus polionotus subgriseus
,
Oncorhynchus tshawytscha
,
Capra hircus
,
Paralichthys olivaceus
,
Psetta maxima
,
Pan troglodytes verus
,
Lates calcarifer
,
Oncorhynchus nerka
,
Sebastes rastrelliger
,
Thymallus thymallus
,
Solea senegalensis
,
Coregonus clupeaformis
,
Torpedo californica
,
Thunnus thynnus
,
Cynoglossus semilaevis
,
Salvelinus fontinalis
,
Macaca mulatta
ABOUT THIS RECORD
ID:
MNEST009272
species:
Dissostichus mawsoni
miRNA family:
let-7
source:
miRNEST
Taxonomy by NCBI:
Dissostichus mawsoni
Dissostichus
Nototheniidae
Notothenioidei
Perciformes
Percomorpha
Euacanthopterygii
Acanthopterygii
Holacanthopterygii
Euacanthomorpha
Acanthomorpha
Ctenosquamata
Eurypterygii
Neoteleostei
Neognathi
Euteleostei
Clupeocephala
Elopocephala
Teleostei
Neopterygii
Actinopteri
Actinopterygii
Euteleostomi
Teleostomi
Gnathostomata
Vertebrata
Craniata
Chordata
Deuterostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGAGGTAGTAGGTTGTATAGT
miRNA*
TATACAACTTACTGTCTTTCC
mismatches:
1
bulges:
0
View larger
pre-miRNA
GTTAAAGACTGTCCTTTGGGG
TGAGGTAGTAGGTTGTATAGT
TTTAGGGTCATACCCTTCCTGTCAGATAAC
TATACAACTTACTGTCTTTCC
TGAAGTG
GCTGTAATGTC
dot-bracket secondary structure
.......((.((((((((((.
.((((((((((((((((((((
(..(((((...)))))...........)))
)))))))))))))))))).))
))))).)
)).))......
SIMILARITIES
miRBase
tni-let-7a-2
:
5e-40
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
let-7: 1e-31
most similar mature miRNAs
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record