ABOUT THIS RECORDspecies: Osmerus mordax
miRNA family: miR-328a
source: miRNEST
Taxonomy by NCBI:
Osmerus mordax Osmerus Osmerini Osmerinae Osmeridae Osmeroidea Osmeroidei Osmeriformes Protacanthopterygii Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GAGGGGCAGGAGGGGCTCCCG miRNA* GGAACCTACCTGCCTCAGTC mismatches: 5 bulges: 1 |
pre-miRNA
TCCAGGAGGACGAGGGGCAGGAGGGGCTCCCGTCCCAGCTGCGCCACAGGAGGCTGACAGCCTACCTGGACCTGAGCCTGAACAAGTGCTATGTCATTCC
CCTCAACACCTCCATTGTCATGCCTCCTAAAGACTTCCTGGAACTGCTGGTCAACATCAAGGCTGGAACCTACCTGCCTCAGTCCTACCTGG
dot-bracket secondary structure
.((((((((((..((((((((.(((..(((.((((((((....((..(((((((((((((........(((...(((((.....)).)))..))).....
..............)))))).)))))))..((.....))))....)))))..........))).))).))).)))))))).))))).)))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TCCAGGAGGACGAGGGGCAGGAGGGGCTCCCGTCCCAGCTGCGCCACAGGAGGCTGACAGCCTACCTGGACCTGAGCCTGAACAAGTGCTATGTCATTCC
CCTCAACACCTCCATTGTCATGCCTCCTAAAGACTTCCTGGAACTGCTGGTCAACATCAAGGCTGGAACCTACCTGCCTCAGTCCTACCTGG
dot-bracket secondary structure
.((((((((((..((((((((.(((..(((.((((((((....((..(((((((((((((........(((...(((((.....)).)))..))).....
..............)))))).)))))))..((.....))))....)))))..........))).))).))).)))))))).))))).)))))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|O42204|ITM2B_CHICK: 2e-20 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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