ABOUT THIS RECORDspecies: Cyprinus carpio
miRNA family: miR-124
source: miRNEST
Taxonomy by NCBI:
Cyprinus carpio Cyprinus Cyprinidae Cyprinoidea Cypriniformes Cypriniphysi Otophysi Ostariophysi Otocephala Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGTGTTCACAGCGGACCTTGA miRNA* AAGGCACGCGGTGAATGCCAA mismatches: 4 bulges: 0 |
pre-miRNA
GCAAACAGGCCTGCTTTTCTTCGTGTTCACAGCGGACCTTGATTTAAATTTCCATACAATTAAGGCACGCGGTGAATGCCAAGAAAGATGGCAAATATCA
dot-bracket secondary structure
........(((...(((((((.((((((((.(((..((((((((.............))))))))..))).)))))))).)))))))..)))........
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GCAAACAGGCCTGCTTTTCTTCGTGTTCACAGCGGACCTTGATTTAAATTTCCATACAATTAAGGCACGCGGTGAATGCCAAGAAAGATGGCAAATATCA
dot-bracket secondary structure
........(((...(((((((.((((((((.(((..((((((((.............))))))))..))).)))))))).)))))))..)))........
SIMILARITIES| miRBase dre-mir-124-2: 4e-37 PMRD no hits microPC no hits | UniProt no hits RFAM mir-124: 3e-35 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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