ABOUT THIS RECORDspecies: Lutzomyia longipalpis
miRNA family: miR-2700
source: miRNEST
Taxonomy by NCBI:
Lutzomyia longipalpis Lutzomyia Lutzomyia Phlebotominae Psychodidae Psychodoidea Psychodomorpha Nematocera Diptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTTGCAAATTTCATCTTCAA miRNA* GATGATGAAGTTGCGGAAGT mismatches: 2 bulges: 1 |
pre-miRNA
TGCTCTTGGTGAGAAGCTCAATGATGATGAAGTTGCGGAAGTATTCAAGGACTGCATGGACCCTGAGGATGACGACGGCCAGATCCCATATGCCCCATTC
CTTAAGAAAATGATGGCTTAAGAAGTGGGATGTCCACCTACAAATATCAATACACATTTTTGCAAATTTCATCTTCAAAATCGTTTCAAAAGAGTAT
dot-bracket secondary structure
.((((((..(((((.......(((.(((((((((((((((((......((((.(((((......(.((((............))))).)))))((((((.
((((((..........)))))).))))))..))))....................)))))))).))))))))).)))......))))).))))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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TGCTCTTGGTGAGAAGCTCAATGATGATGAAGTTGCGGAAGTATTCAAGGACTGCATGGACCCTGAGGATGACGACGGCCAGATCCCATATGCCCCATTC
CTTAAGAAAATGATGGCTTAAGAAGTGGGATGTCCACCTACAAATATCAATACACATTTTTGCAAATTTCATCTTCAAAATCGTTTCAAAAGAGTAT
dot-bracket secondary structure
.((((((..(((((.......(((.(((((((((((((((((......((((.(((((......(.((((............))))).)))))((((((.
((((((..........)))))).))))))..))))....................)))))))).))))))))).)))......))))).))))))..
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|Q24756|MLC1_DROVI: 0.00000005 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
