miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Oryzias latipes, Gasterosteus aculeatus, Gadus morhua, Oreochromis niloticus, Fundulus heteroclitus, Sparus aurata, Dicentrarchus labrax, Dissostichus mawsoni, Anoplopoma fimbria, Esox lucius, Takifugu rubripes, Sebastes caurinus, Perca flavescens, Paralabidochromis chilotes, Hippoglossus hippoglossus, Poecilia reticulata, Paralichthys olivaceus, Psetta maxima, Lates calcarifer, Sebastes rastrelliger, Solea senegalensis, Thunnus thynnus, Cynoglossus semilaevis



ABOUT THIS RECORD

ID: MNEST009409
species: Esox lucius
miRNA family: mir-341
source: miRNEST

Taxonomy by NCBI:
Esox lucius Esox Esocidae Esociformes Neognathi Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCGGTCGGTCGGTCGGTCGGT

miRNA*
 GATCGATTTTTCTTTGACC

mismatches: 5
bulges: 1
View larger
pre-miRNA
 GGGGGGGTCGGTCGGTCGGTCGGTCGGTGGTCTCTATGAACAAAACTAGTTTGTTACCCAGAGAGGTTTCGGGGAGAAGCTGTTTTTTTGCTGAGGTAAC
TTGAGTTTAGATAAAATGGACCCTAAGGGAGTGAGACTTGAGTGTAGACTAGTAGGAAAACAAAACGTACATTTAGGTATGTAACGAGATCGATTTTTCT
TTGACCTTTT

dot-bracket secondary structure
..(((((((((..((..((((((((..((.(((((...((((((.....))))))....)))))((((((.....))))))(((((((((((..(((.((
((((((((.......((...(((...))).)).))))))))))....))))))))))))))...((((((......))))))..)).))))))))..)).
))))))))).


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record




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