ABOUT THIS RECORDspecies: Esox lucius
miRNA family: miR-133a
source: miRNEST
Taxonomy by NCBI:
Esox lucius Esox Esocidae Esociformes Neognathi Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCTGGTAAAAAGGAACCAAAT miRNA* TTGGTCCCCTTCAACCAGCTG mismatches: 4 bulges: 0 |
pre-miRNA
AACCCACAAGGCTTTGCTAAAGCTGGTAAAAAGGAACCAAATCACCTCTTGGATGGATTTGGTCCCCTTCAACCAGCTGTAGCTATGCTTTGATGAC
dot-bracket secondary structure
......((((((...((((.(((((((..((.((.((((((((.((....))...)))))))).)).))..))))))).))))...)))))).....
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AACCCACAAGGCTTTGCTAAAGCTGGTAAAAAGGAACCAAATCACCTCTTGGATGGATTTGGTCCCCTTCAACCAGCTGTAGCTATGCTTTGATGAC
dot-bracket secondary structure
......((((((...((((.(((((((..((.((.((((((((.((....))...)))))))).)).))..))))))).))))...)))))).....
SIMILARITIES| miRBase dre-mir-133a-1: 1e-37 PMRD no hits microPC no hits | UniProt no hits RFAM mir-133: 3e-23 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
