ABOUT THIS RECORDspecies: Squalus acanthias
miRNA family: miR-1587
source: miRNEST
Taxonomy by NCBI:
Squalus acanthias Squalus Squalidae Squaloidei Squaliformes Hypnosqualea Squalea Neoselachii Elasmobranchii Chondrichthyes Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGGCTGGGCTGGGCTGTGCAT miRNA* GCGGGGTCCGGGCCAGCCAGC mismatches: 5 bulges: 0 |
pre-miRNA
AGATAGGAGAGCGGCGGGGTCCGGGCCAGCCAGCGACACCCAGGGTCTAACCTGTGCACCCAGGGCTGGGCTGGGCTGGGCTGTGCATCACTCCCGGG
dot-bracket secondary structure
.....((((....(((.(((((((.((((((.......(((.((((.((.....)).)))).)))...)))))).))))))).)))....))))....
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AGATAGGAGAGCGGCGGGGTCCGGGCCAGCCAGCGACACCCAGGGTCTAACCTGTGCACCCAGGGCTGGGCTGGGCTGGGCTGTGCATCACTCCCGGG
dot-bracket secondary structure
.....((((....(((.(((((((.((((((.......(((.((((.((.....)).)))).)))...)))))).))))))).)))....))))....
SIMILARITIES| miRBase hsa-mir-4537: 0.0003 PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
