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Species belonging to selected taxon:

Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Pseudoroegneria spicata, Triticum monococcum, Triticum turgidum subsp. durum, Triticum aestivum



ABOUT THIS RECORD

ID: MNEST000948
species: Hordeum vulgare
miRNA family: MIRf341
source: miRNEST

Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CTCCGTTCCTAAATATAAGTC

miRNA*
 AGTATTTAGGAACGGAGGG

mismatches: 1
bulges: 2
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pre-miRNA
 TATCCCCTGTTTACCTGCTGGCTTCTACTCCCTCCGTTCCTAAATATAAGTCTTTTTAGAGATTTCACTAGGAGACTACATACGGAGCAAAATGAATGAA
TCTACACTCTAAAATATGTTTATATACATTCGTATGTAGTCTTTTAATGAAACATCTAAAAAAAATTATGAAGTATTTAGGAACGGAGGGAGTAGTTTGG
TGGCATGGATGACCTGCA

dot-bracket secondary structure
........(((..(((((((.((.(((((((((((((((((((((((...((((((((((..(((((.((((((((((((((((((.....(((((((.(
(............)).))))))).....)))))))))))))))))).)))))..)))))))).......)).)))))))))))))))))))))))...))
))))).))..))).....


SIMILARITIES
miRBase tae-MIR1126: 9e-28

PMRD tae-miR1126: 9e-28

microPC miR1436: 4e-27		UniProt no hits

RFAM MIR1122: 3e-40		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
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