ABOUT THIS RECORDspecies: Takifugu rubripes
miRNA family: miR-3481
source: miRNEST
Taxonomy by NCBI:
Takifugu rubripes Takifugu Tetraodontidae Tetradontoidea Tetraodontoidei Tetraodontiformes Percomorpha Euacanthopterygii Acanthopterygii Holacanthopterygii Euacanthomorpha Acanthomorpha Ctenosquamata Eurypterygii Neoteleostei Neognathi Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGTGGTCTTTCTATGGACAAG miRNA* TGGACATTGAGATTGCCACCTA mismatches: 4 bulges: 1 |
pre-miRNA
TCAAGCTGGCTTTGGACATTGAGATTGCCACCTATAGGAAATTGCTGGAGGGAGAGGAGGACAGGCTGGCAAATGGCATCAAGTCTATCAACATCTCCCA
ACAGAGCACAAGCTATGGTGGTCTTTCTATGGACAAGAGTGGCTAC
dot-bracket secondary structure
...(((((..((((..(((.((((..((((((.((((.......(((..((((((....((.(((((.((.....))....))))).))....)))))).
.)))........)))))))))).)))).)))..))))..)))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TCAAGCTGGCTTTGGACATTGAGATTGCCACCTATAGGAAATTGCTGGAGGGAGAGGAGGACAGGCTGGCAAATGGCATCAAGTCTATCAACATCTCCCA
ACAGAGCACAAGCTATGGTGGTCTTTCTATGGACAAGAGTGGCTAC
dot-bracket secondary structure
...(((((..((((..(((.((((..((((((.((((.......(((..((((((....((.(((((.((.....))....))))).))....)))))).
.)))........)))))))))).)))).)))..))))..)))))..
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|Q6NWF6|K2C8_DANRE: 0.000000000000007 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
