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Species belonging to selected taxon:
Oryzias latipes
,
Salmo salar
,
Oncorhynchus mykiss
,
Gasterosteus aculeatus
,
Gadus morhua
,
Oreochromis niloticus
,
Fundulus heteroclitus
,
Sparus aurata
,
Dicentrarchus labrax
,
Dissostichus mawsoni
,
Osmerus mordax
,
Anoplopoma fimbria
,
Esox lucius
,
Takifugu rubripes
,
Sebastes caurinus
,
Perca flavescens
,
Paralabidochromis chilotes
,
Hippoglossus hippoglossus
,
Poecilia reticulata
,
Oncorhynchus tshawytscha
,
Paralichthys olivaceus
,
Psetta maxima
,
Lates calcarifer
,
Oncorhynchus nerka
,
Sebastes rastrelliger
,
Thymallus thymallus
,
Solea senegalensis
,
Coregonus clupeaformis
,
Thunnus thynnus
,
Cynoglossus semilaevis
,
Salvelinus fontinalis
ABOUT THIS RECORD
ID:
MNEST009514
species:
Sebastes caurinus
miRNA family:
miR-3201
source:
miRNEST
Taxonomy by NCBI:
Sebastes caurinus
Sebastes
Sebastinae
Sebastidae
Scorpaenoidei
Scorpaeniformes
Percomorpha
Euacanthopterygii
Acanthopterygii
Holacanthopterygii
Euacanthomorpha
Acanthomorpha
Ctenosquamata
Eurypterygii
Neoteleostei
Neognathi
Euteleostei
Clupeocephala
Elopocephala
Teleostei
Neopterygii
Actinopteri
Actinopterygii
Euteleostomi
Teleostomi
Gnathostomata
Vertebrata
Craniata
Chordata
Deuterostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGGATATAAAGAAAAATCAAA
miRNA*
CTGACTTTATTTATTTCCACA
mismatches:
3
bulges:
2
View larger
pre-miRNA
AGCTAAACCTTTTGGAGAAAACATGAATGTGTT
CTGACTTTATTTATTTCCACA
TAATGAGGCTCAAACAAGAAAAGATTTAAC
TGGATATAAAGAAAAA
TCAAA
CAAACGTTAGTTTCACTGGATGTCTCTCAA
dot-bracket secondary structure
..(((((...))))).((((...(((...((((
.(((.(((.(((((.((((..
(((......((......))......)))..
)))).)))))..))).
)))))
))....))).))))...(((....)))...
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
Source sequences
download this record