ABOUT THIS RECORDspecies: Ceratitis capitata
miRNA family: mir-467
source: miRNEST
Taxonomy by NCBI:
Ceratitis capitata Ceratitis Ceratitis Ceratitidini Dacinae Tephritidae Tephritoidea Acalyptratae Schizophora Cyclorrhapha Eremoneura Muscomorpha Brachycera Diptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TATATATACATGCATACATAC miRNA* ATGCATATGTATGTGTAAATGTG mismatches: 3 bulges: 2 |
pre-miRNA
ATTCATTTCACTTGTTTTCTAAATATTTCCAAAATTATATGCATATGTATGTGTAAATGTGGATATTACAGCATTTCTGGGGACTTGTTTTTAGATAAAG
CTCCAGCGGTTTTACAGGATATAAATACTATATATACATGCATACATACAAATGATAAATATTTAATGTCAAGTATGTAGCCAA
dot-bracket secondary structure
.........(((((.....(((((((((.((...((.((((..((((((((((((.(((((.(((((..((.(((.((((((..(((((....)))))..
)))))).))).))....)))))...))).)).)))))))))))))))).)).))..)))))))))....)))))..........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ATTCATTTCACTTGTTTTCTAAATATTTCCAAAATTATATGCATATGTATGTGTAAATGTGGATATTACAGCATTTCTGGGGACTTGTTTTTAGATAAAG
CTCCAGCGGTTTTACAGGATATAAATACTATATATACATGCATACATACAAATGATAAATATTTAATGTCAAGTATGTAGCCAA
dot-bracket secondary structure
.........(((((.....(((((((((.((...((.((((..((((((((((((.(((((.(((((..((.(((.((((((..(((((....)))))..
)))))).))).))....)))))...))).)).)))))))))))))))).)).))..)))))))))....)))))..........
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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